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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
DNase-seq
15
ChIP-seq
Assay category
19
DNA accessibility
15
DNA binding
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
June, 2019
November, 2017
15
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
2782
bam
2585
bigWig
1600
tsv
1254
bed narrowPeak
1034
fastq
520
bigBed narrowPeak
320
tagAlign
161
txt
153
zippedFastqFolder
86
bed bed3+
65
bed broadPeak
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
34
bigBed broadPeak
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
34
Homo sapiens
Biosample type
19
primary cell
13
tissue
1
cell line
1
in vitro differentiated cells
Organ
6
blood vessel
6
vasculature
4
epithelium
4
limb
4
vein
3
connective tissue
3
liver
3
pancreas
2
artery
2
brain
2
nerve
1
adipose tissue
1
spleen
Project
34
AMP
Genome assembly (visualization)
34
hg19
30
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent assembly
organ_slims!
ureter
month_released!
November, 2017
June, 2019
BIOSAMPLE
ASSAY
34 results
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Clear Filters
DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
osteoblast
1
tissue
body of pancreas
2
brain
2
liver
2
tibial artery
2
tibial nerve
2
+ See 3 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
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