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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
Assay category
15
DNA binding
Target of assay
922
histone modification
921
histone
473
narrow histone mark
447
broad histone mark
268
control
256
transcription factor
71
RNA binding protein
23
recombinant protein
15
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
November, 2017
7
November, 2018
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
15
bam
15
bed narrowPeak
15
bigWig
15
fastq
13
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
15
Homo sapiens
Biosample type
9
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
8
liver
4
blood
4
bodily fluid
2
connective tissue
1
epithelium
Project
15
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
Lab
15
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
7
inconsistent control read length
4
inconsistent control run_type
organ_slims!
ureter
month_released!
November, 2017
January, 2019
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
cell line
HepG2
5
GM12878
4
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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