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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
ChIP-seq
89
total RNA-seq
6
RRBS
5
DNase-seq
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
230
DNA binding
89
Transcription
10
DNA accessibility
9
DNA methylation
Target of assay
157
histone modification
156
histone
86
broad histone mark
69
narrow histone mark
44
control
29
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
399
May, 2021
385
November, 2017
341
May, 2020
338
August, 2017
329
February, 2021
318
August, 2021
313
October, 2019
204
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
120
May, 2019
96
July, 2019
83
December, 2017
82
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
52
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
253
fastq
249
bam
239
bigWig
123
bed narrowPeak
89
tsv
77
tagAlign
40
bed broadPeak
34
bigBed narrowPeak
25
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
331
Homo sapiens
Biosample type
222
tissue
62
in vitro differentiated cells
54
primary cell
Organ
180
pancreas
119
connective tissue
adipose tissue
53
liver
26
musculature of body
25
epithelium
Project
338
AMP
Genome assembly (visualization)
245
hg19
217
GRCh38
Lab
338
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
ureter
adipose tissue
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
338 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
47
1
3
skeletal muscle tissue
22
4
pancreas
10
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
61
1
primary cell
skeletal muscle myoblast
14
1
2
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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