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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
105
total RNA-seq
40
single cell RNA-seq
7
ATAC-seq
6
RRBS
5
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
246
DNA binding
145
Transcription
13
DNA accessibility
9
DNA methylation
Target of assay
167
histone modification
166
histone
89
broad histone mark
76
narrow histone mark
44
control
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
204
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
310
fastq
265
bam
258
bigWig
139
bed narrowPeak
89
tsv
77
tagAlign
40
bed broadPeak
40
bigBed narrowPeak
29
bed bed3+
19
zippedFastqFolder
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
406
Homo sapiens
Biosample type
227
tissue
118
primary cell
68
in vitro differentiated cells
Organ
207
pancreas
125
connective tissue
adipose tissue
54
liver
48
epithelium
26
musculature of body
Project
354
AMP
59
HPAP
Genome assembly (visualization)
261
hg19
236
GRCh38
Lab
354
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
ureter
adipose tissue
BIOSAMPLE
ASSAY
413 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
RRBS
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
right lobe of liver
1
1
primary cell
Langerhans cell
40
pancreatic alpha cell
13
15
3
skeletal muscle myoblast
15
1
2
pancreatic beta cell
13
1
2
pancreatic endocrine cell
12
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in vitro differentiated cells
adipocyte
67
1
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