Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
RRBS
Assay category
212
DNA binding
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
85
October, 2019
28
May, 2019
15
October, 2017
14
July, 2019
12
February, 2020
2
March, 2020
Available data
202
bam
180
bigWig
166
bed narrowPeak
118
tagAlign
90
bigBed narrowPeak
26
tsv
12
fastq
11
bed broadPeak
2
bed bed3+
2
bigBed broadPeak
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
241
Homo sapiens
Biosample type
233
tissue
8
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
241
AMP
Genome assembly (visualization)
179
GRCh38
132
hg19
Lab
241
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
vasculature
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
241 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
RRBS
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
See all biosamples
Download