Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
ChIP-seq
257
single cell RNA-seq
245
total RNA-seq
235
ATAC-seq
87
RNA microarray
83
snATAC-seq
73
WGBS
52
pCHi-C
25
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
257
Transcription
Date released
100
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
21
February, 2021
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
102
tsv
52
zippedFastqFolder
36
fastq
13
txt
8
csv
Organism
260
Homo sapiens
Biosample type
171
tissue
87
primary cell
2
in vitro differentiated cells
Organ
93
heart
67
kidney
9
lung
6
blood vessel
vasculature
2
artery
1
liver
1
musculature of body
Project
119
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
hg19
Lab
108
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
organ_slims!
vasculature
assembly!
hg19
BIOSAMPLE
ASSAY
260 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snDrop-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
85
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download