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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
245
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
DNA accessibility
256
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
June, 2019
26
July, 2019
20
February, 2021
9
October, 2019
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
483
bigWig
470
bam
343
fastq
256
tsv
212
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
43
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
Organism
770
Homo sapiens
Biosample type
2217
tissue
770
primary cell
573
cell line
351
in vitro differentiated cells
10
stem cell
Organ
315
epithelium
275
pancreas
31
connective tissue
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
346
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
496
hg19
444
GRCh38
Lab
311
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vasculature
audit.ERROR.category!
inconsistent replicate
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
770 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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