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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
208
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
181
histone
181
histone modification
114
narrow histone mark
67
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
232
bam
210
bigWig
194
bed narrowPeak
118
bigBed narrowPeak
114
tagAlign
39
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
11
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
272
Homo sapiens
Biosample type
261
tissue
11
primary cell
Organ
892
pancreas
778
liver
667
connective tissue
503
epithelium
479
adipose tissue
354
kidney
353
heart
282
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
272
AMP
Genome assembly (visualization)
208
GRCh38
151
hg19
Lab
272
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
organ_slims!
vasculature
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
16
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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