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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
792
ChIP-seq
Assay category
1151
Transcription
792
DNA binding
396
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
537
histone modification
536
histone
289
narrow histone mark
247
broad histone mark
169
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
172
October, 2019
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
50
May, 2020
48
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
Available data
647
bam
516
bigWig
496
bed narrowPeak
320
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
785
Homo sapiens
Biosample type
792
tissue
476
cell line
198
in vitro differentiated cells
172
primary cell
3
stem cell
Organ
209
brain
155
liver
115
pancreas
83
heart
74
connective tissue
73
adipose tissue
73
blood vessel
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
792
AMP
2
T1D
Genome assembly (visualization)
491
GRCh38
470
hg19
Lab
792
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
792 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
69
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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