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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1023
total RNA-seq
832
ChIP-seq
211
ATAC-seq
DNase-seq
112
single cell RNA-seq
87
RNA microarray
25
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1151
Transcription
832
DNA binding
223
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
572
histone modification
571
histone
304
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
223
August, 2021
214
October, 2019
193
May, 2020
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
48
December, 2017
42
February, 2023
40
May, 2024
40
November, 2019
39
May, 2021
33
March, 2020
23
October, 2017
22
February, 2020
17
November, 2018
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1646
bam
1528
bigWig
1062
tsv
710
bed narrowPeak
367
fastq
327
bigBed narrowPeak
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2366
Homo sapiens
Biosample type
2374
tissue
583
cell line
497
primary cell
393
in vitro differentiated cells
8
stem cell
Organ
545
connective tissue
486
adipose tissue
468
pancreas
357
liver
286
heart
238
brain
184
kidney
158
bone element
128
blood vessel
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2374
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1580
GRCh38
1527
hg19
Lab
2115
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
2374 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
69
57
4
3
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
1
kidney
49
27
75
17
1
1
6
1
bone element
84
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