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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1023
total RNA-seq
512
ChIP-seq
208
ATAC-seq
112
single cell RNA-seq
87
RNA microarray
25
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
8
snATAC-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1151
Transcription
512
DNA binding
217
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
314
histone modification
313
histone
214
narrow histone mark
171
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
223
August, 2021
193
May, 2020
189
October, 2019
120
July, 2018
68
July, 2019
66
May, 2022
42
February, 2023
40
May, 2024
40
November, 2019
39
May, 2021
33
March, 2020
29
October, 2018
25
November, 2017
22
February, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
11
May, 2019
9
November, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1818
bam
1700
bigWig
1062
tsv
882
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2046
Homo sapiens
Biosample type
2048
tissue
434
primary cell
377
in vitro differentiated cells
230
cell line
8
stem cell
Organ
537
connective tissue
478
adipose tissue
413
pancreas
312
liver
225
heart
165
kidney
158
bone element
149
brain
71
blood vessel
vasculature
53
eye
48
artery
44
musculature of body
38
limb
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2048
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1259
GRCh38
1252
hg19
Lab
1789
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
organ_slims!
vasculature
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
2048 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
291
69
57
4
3
1
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
kidney
49
9
75
17
1
1
6
bone element
84
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