Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
903
total RNA-seq
647
ChIP-seq
172
DNase-seq
61
ATAC-seq
16
small RNA-seq
15
WGBS
4
FAIRE-seq
Assay category
919
Transcription
647
DNA binding
237
DNA accessibility
15
DNA methylation
Target of assay
410
histone modification
409
histone
223
narrow histone mark
186
broad histone mark
151
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
170
August, 2017
160
June, 2019
160
October, 2019
116
July, 2018
79
April, 2019
74
October, 2018
69
November, 2017
65
May, 2019
57
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
March, 2020
6
September, 2017
1
March, 2019
Available data
1818
bam
1700
bigWig
1062
tsv
882
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1811
Homo sapiens
Biosample type
1818
tissue
512
cell line
397
primary cell
291
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
427
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1818
AMP
2
T1D
Genome assembly (visualization)
1631
GRCh38
1577
hg19
Lab
1793
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1818 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
28
1
38
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
+ See 135 more…
See all biosamples
Download