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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
946
total RNA-seq
792
ChIP-seq
173
DNase-seq
101
single cell RNA-seq
93
ATAC-seq
87
RNA microarray
25
WGBS
23
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1063
Transcription
792
DNA binding
272
DNA accessibility
36
DNA methylation
12
3D chromatin structure
Target of assay
537
histone modification
536
histone
289
narrow histone mark
247
broad histone mark
169
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
93
August, 2021
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
65
May, 2019
48
December, 2017
42
February, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
22
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1793
bam
1639
bigWig
1061
tsv
740
bed narrowPeak
499
bigBed narrowPeak
351
fastq
238
tagAlign
206
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
94
txt
24
bed bedMethyl
24
bigBed bedMethyl
8
bedpe bed3+
8
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2280
Homo sapiens
Biosample type
2288
tissue
545
cell line
487
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
488
adipose tissue
438
pancreas
321
liver
273
heart
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
110
kidney
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2288
AMP
4
T1D
Genome assembly (visualization)
1640
hg19
1634
GRCh38
Lab
2288
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
2288 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
284
69
1
34
4
1
1
1
1
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
3
18
2
4
1
1
1
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