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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1023
total RNA-seq
792
ChIP-seq
211
ATAC-seq
112
single cell RNA-seq
87
RNA microarray
25
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
13
DNase-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1151
Transcription
792
DNA binding
236
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
537
histone modification
536
histone
289
narrow histone mark
247
broad histone mark
171
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
48
December, 2017
42
February, 2023
40
November, 2019
39
May, 2021
33
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1658
bam
1500
bigWig
1062
tsv
682
bed narrowPeak
377
fastq
339
bigBed narrowPeak
238
tagAlign
157
txt
64
xls
48
bed broadPeak
40
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
11
bigBed broadPeak
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2339
Homo sapiens
Biosample type
2347
tissue
585
cell line
471
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
546
connective tissue
487
adipose tissue
471
pancreas
361
liver
246
heart
240
brain
184
kidney
158
bone element
130
blood vessel
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2347
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1552
GRCh38
1539
hg19
Lab
2128
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
month_released!
June, 2019
BIOSAMPLE
ASSAY
2347 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
DNase-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
69
57
4
3
1
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
2
1
kidney
49
27
75
17
1
1
6
1
bone element
84
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