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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1023
total RNA-seq
565
ChIP-seq
211
ATAC-seq
173
DNase-seq
112
single cell RNA-seq
87
RNA microarray
25
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1151
Transcription
565
DNA binding
396
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
572
histone modification
571
histone
304
narrow histone mark
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
211
August, 2017
193
May, 2020
191
October, 2019
160
June, 2019
120
July, 2018
70
July, 2019
66
May, 2022
55
October, 2018
45
December, 2017
43
April, 2019
42
February, 2023
40
November, 2017
40
November, 2019
39
May, 2021
33
March, 2020
31
May, 2019
26
November, 2018
22
February, 2020
20
May, 2024
15
May, 2023
13
October, 2017
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1632
bam
1483
bigWig
1062
tsv
665
bed narrowPeak
332
fastq
331
bigBed narrowPeak
194
bed bed3+
188
bed broadPeak
171
bigBed broadPeak
162
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2276
Homo sapiens
Biosample type
2280
tissue
566
cell line
453
primary cell
338
in vitro differentiated cells
7
stem cell
Organ
527
connective tissue
468
adipose tissue
434
pancreas
336
liver
256
heart
242
kidney
195
brain
158
bone element
97
blood vessel
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2280
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1546
GRCh38
1521
hg19
Lab
2041
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
vasculature
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2280 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
55
57
1
4
3
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
123
20
2
1
3
1
1
1
1
kidney
49
17
75
13
17
1
1
6
1
bone element
84
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