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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
44
ChIP-seq
9
RRBS
2
DNase-seq
2
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
161
Transcription
114
DNA accessibility
44
DNA binding
10
DNA methylation
2
3D chromatin structure
Target of assay
31
control
16
histone
16
histone modification
10
narrow histone mark
6
broad histone mark
Date released
102
May, 2020
48
July, 2018
43
April, 2018
27
September, 2018
26
August, 2017
26
July, 2019
12
February, 2023
12
May, 2021
8
June, 2019
5
December, 2019
5
October, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
August, 2021
1
May, 2019
1
November, 2017
1
November, 2018
Available data
397
bam
394
bigWig
234
fastq
bed narrowPeak
166
tsv
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
Organism
332
Homo sapiens
Biosample type
1665
tissue
332
primary cell
262
in vitro differentiated cells
195
cell line
6
stem cell
Organ
148
epithelium
126
pancreas
21
connective tissue
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
332
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
230
hg19
166
GRCh38
Lab
327
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
24
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
vasculature
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
332 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
CD4-positive, alpha-beta memory T cell
22
pancreatic acinar cell
12
4
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