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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
62
ATAC-seq
34
total RNA-seq
10
MeRIP-seq
3
single cell RNA-seq
1
Hi-C
Assay category
70
DNA binding
62
DNA accessibility
37
Transcription
1
3D chromatin structure
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
13
control
12
transcription factor
5
RNA binding protein
5
nucleotide modification
Date released
August, 2021
83
May, 2021
64
May, 2022
14
May, 2023
10
November, 2020
5
March, 2019
3
February, 2023
1
October, 2017
Available data
70
bed narrowPeak
64
bigWig
26
fastq
25
bam
9
txt
3
bed bedgraph
2
bed bed3+
2
bed broadPeak
1
bedpe
1
hic
Organism
180
Homo sapiens
Biosample type
89
tissue
50
in vitro differentiated cells
35
primary cell
6
cell line
Organ
41
pancreas
40
liver
14
kidney
6
epithelium
Project
324
HPAP
236
T1D
180
AMP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
85
hg19
14
GRCh38
Lab
AMP-T2D consortium
107
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
14
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
organ_slims!
vasculature
month_released!
August, 2021
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
single cell RNA-seq
Hi-C
tissue
liver
20
20
islet of Langerhans
23
6
4
1
kidney
11
3
pancreas
1
in vitro differentiated cells
embryonic stem cell
37
6
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
primary cell
CD8-positive, alpha-beta T cell
33
2
cell line
EndoC_BH1
6
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