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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
997
total RNA-seq
832
ChIP-seq
173
ATAC-seq
173
DNase-seq
111
single cell RNA-seq
87
RNA microarray
25
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
7
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1124
Transcription
832
DNA binding
357
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
572
histone modification
571
histone
304
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
May, 2022
65
May, 2019
48
December, 2017
42
February, 2023
40
May, 2024
40
November, 2019
39
May, 2021
33
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1794
bam
1680
bigWig
1062
tsv
844
bed narrowPeak
499
bigBed narrowPeak
353
fastq
238
tagAlign
208
bed broadPeak
199
bed bed3+
171
bigBed broadPeak
150
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2473
Homo sapiens
Biosample type
2481
tissue
585
cell line
522
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
488
adipose tissue
451
pancreas
321
liver
313
heart
265
brain
252
kidney
158
bone element
133
blood vessel
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2481
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1752
GRCh38
1644
hg19
Lab
2286
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
month_released!
May, 2022
BIOSAMPLE
ASSAY
2481 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
285
69
39
1
4
3
1
1
1
4
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
1
kidney
49
27
75
13
17
1
1
6
1
bone element
84
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