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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1531
ChIP-seq
1336
total RNA-seq
443
ATAC-seq
355
single cell RNA-seq
200
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
51
pCHi-C
25
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1336
Transcription
Date released
471
February, 2021
190
May, 2020
120
July, 2018
98
May, 2021
89
August, 2017
89
February, 2023
67
August, 2021
39
July, 2019
28
October, 2019
26
May, 2022
26
September, 2018
22
February, 2020
20
November, 2019
16
September, 2020
12
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1133
tsv
1103
bam
1099
bigWig
228
fastq
59
txt
2
bed bed3+
Organism
1336
Homo sapiens
Biosample type
1030
tissue
245
primary cell
in vitro differentiated cells
61
cell line
Organ
465
connective tissue
403
pancreas
398
adipose tissue
189
liver
129
epithelium
71
heart
62
bone element
61
blood vessel
vasculature
60
kidney
56
artery
19
eye
17
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1139
AMP
105
T1D
92
HPAP
Genome assembly (visualization)
1100
hg19
1098
GRCh38
Lab
1055
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
41
inconsistent ontology term
organ_slims!
vasculature
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1336 results
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Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
bone tissue
58
kidney
49
+ See 42 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 43 more…
cell line
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
+ See 3 more…
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