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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1473
ChIP-seq
1227
total RNA-seq
285
ATAC-seq
176
DNase-seq
170
single cell RNA-seq
87
RNA microarray
39
pCHi-C
28
snATAC-seq
26
WGBS
23
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
170
Transcription
Date released
100
August, 2021
47
September, 2023
9
April, 2020
6
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
Available data
99
tsv
13
txt
6
csv
Organism
170
Homo sapiens
Biosample type
primary cell
168
tissue
2
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
vasculature
2
artery
1
liver
1
musculature of body
Project
114
AMP
47
KPMP
9
LungMap
Lab
103
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
organ_slims!
vasculature
biosample_type!
primary cell
BIOSAMPLE
ASSAY
170 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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