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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
3
Hi-C
Assay category
7
DNA accessibility
3
3D chromatin structure
Date released
5
February, 2023
2
February, 2021
2
July, 2019
1
October, 2019
Available data
1387
bam
1312
bigWig
975
fastq
800
bed narrowPeak
470
tsv
460
bigBed narrowPeak
154
tagAlign
153
zippedFastqFolder
97
bed broadPeak
97
bigBed broadPeak
60
bed bed3+
12
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
10
Homo sapiens
Biosample type
5
in vitro differentiated cells
tissue
3
primary cell
2
cell line
Organ
7
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
vasculature
1
pancreas
Project
10
AMP
Genome assembly (visualization)
10
hg19
3
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
1
inconsistent assembly
organ_slims!
vasculature
biosample_type!
tissue
BIOSAMPLE
ASSAY
10 results
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Clear Filters
ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
osteoblast
1
cell line
HepG2
1
Panc1
1
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