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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
24
DNase-seq
Assay category
73
DNA binding
24
DNA accessibility
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
20
June, 2019
15
August, 2017
1
November, 2020
1
October, 2019
Available data
1387
bam
1307
bigWig
975
fastq
796
bed narrowPeak
470
tsv
460
bigBed narrowPeak
154
tagAlign
153
zippedFastqFolder
97
bed broadPeak
97
bigBed broadPeak
58
bed bed3+
12
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bed3
4
bed bedgraph
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
txt
1
vcf
Organism
97
Homo sapiens
Biosample type
tissue
59
cell line
37
primary cell
1
in vitro differentiated cells
Organ
60
liver
22
epithelium
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
97
AMP
Genome assembly (visualization)
91
hg19
81
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
biosample_type!
tissue
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
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