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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1019
total RNA-seq
805
ChIP-seq
221
ATAC-seq
173
single cell RNA-seq
141
DNase-seq
RNA microarray
27
snATAC-seq
24
WGBS
23
pCHi-C
15
small RNA-seq
9
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1207
Transcription
805
DNA binding
393
DNA accessibility
31
DNA methylation
9
3D chromatin structure
Target of assay
549
histone modification
548
histone
297
narrow histone mark
251
broad histone mark
167
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
258
August, 2017
222
August, 2021
216
October, 2019
193
May, 2020
128
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
64
May, 2022
63
July, 2019
60
February, 2023
58
May, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
32
March, 2020
26
November, 2018
23
October, 2017
20
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
1
August, 2022
1
December, 2019
1
January, 2018
Available data
1776
bam
1645
bigWig
1053
tsv
833
bed narrowPeak
461
bigBed narrowPeak
375
fastq
223
tagAlign
167
bed bed3+
163
bed broadPeak
139
bigBed broadPeak
72
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2467
Homo sapiens
Biosample type
2475
tissue
1037
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
505
pancreas
487
adipose tissue
361
liver
313
heart
297
kidney
265
brain
133
blood vessel
vasculature
122
limb
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2378
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1712
GRCh38
1624
hg19
Lab
2123
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
audit script error
6
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
musculature of body
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
2475 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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