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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
794
ChIP-seq
222
ATAC-seq
173
DNase-seq
168
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
222
DNA accessibility
Date released
64
August, 2021
44
February, 2023
38
May, 2022
20
November, 2019
15
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
4
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
170
bed narrowPeak
64
xls
61
bam
40
bigWig
29
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
222
Homo sapiens
Biosample type
222
tissue
200
primary cell
42
in vitro differentiated cells
21
cell line
Organ
75
kidney
62
pancreas
39
heart
38
blood vessel
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
211
AMP
11
T1D
Genome assembly (visualization)
120
GRCh38
119
hg19
Lab
93
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
liver
20
retina
15
pigmented layer of retina
12
+ See 26 more…
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