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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1269
total RNA-seq
1090
ChIP-seq
422
ATAC-seq
361
single cell RNA-seq
198
DNase-seq
87
RNA microarray
84
snATAC-seq
72
WGBS
41
pCHi-C
21
Hi-C
20
RRBS
18
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
422
DNA accessibility
Date released
100
May, 2020
77
May, 2022
64
August, 2021
56
February, 2023
20
November, 2019
17
October, 2019
14
September, 2018
13
May, 2021
11
May, 2023
9
February, 2021
8
October, 2017
7
August, 2020
5
August, 2017
5
September, 2017
4
July, 2019
4
March, 2019
3
September, 2020
2
January, 2018
2
March, 2020
1
November, 2020
Available data
209
bed narrowPeak
145
bam
118
bigWig
64
xls
61
fastq
39
zippedFastqFolder
25
bigBed narrowPeak
13
tsv
6
bed bed3
2
bed broadPeak
Organism
422
Homo sapiens
Biosample type
222
tissue
200
primary cell
42
in vitro differentiated cells
21
cell line
Organ
133
pancreas
84
epithelium
75
kidney
39
heart
38
blood vessel
vasculature
37
artery
28
eye
22
liver
12
bone element
12
skeleton
8
connective tissue
8
limb
6
adipose tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
362
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
203
hg19
169
GRCh38
Lab
244
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
13
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
422 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
liver
20
retina
15
pigmented layer of retina
12
+ See 26 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 34 more…
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