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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
222
ATAC-seq
209
ChIP-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
427
DNA accessibility
209
DNA binding
36
DNA methylation
15
3D chromatin structure
Target of assay
388
histone modification
histone
196
narrow histone mark
191
broad histone mark
119
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
160
June, 2019
153
August, 2017
143
May, 2020
120
July, 2018
70
July, 2019
66
May, 2022
60
February, 2023
57
October, 2019
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
35
March, 2020
26
November, 2018
22
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
May, 2019
9
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
2
November, 2017
1
August, 2022
1
January, 2019
Available data
1409
bam
1235
bigWig
1062
tsv
419
bed narrowPeak
304
fastq
241
bigBed narrowPeak
188
bed bed3+
173
bed broadPeak
171
bigBed broadPeak
157
txt
64
xls
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2017
Homo sapiens
Biosample type
2019
tissue
829
primary cell
555
cell line
268
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
430
pancreas
279
kidney
266
liver
218
heart
158
bone element
79
blood vessel
vasculature
73
limb
62
brain
55
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1924
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1315
GRCh38
1302
hg19
Lab
1702
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
organ_slims!
vasculature
files.file_type!
tagAlign
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2019 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
68
19
6
1
7
4
3
1
1
4
adipose tissue
382
3
1
3
1
liver
167
20
55
1
2
3
1
1
1
1
kidney
49
75
7
64
13
6
1
1
1
bone element
84
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