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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
792
ChIP-seq
220
ATAC-seq
173
DNase-seq
168
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1206
Transcription
792
DNA binding
425
DNA accessibility
36
DNA methylation
9
3D chromatin structure
Target of assay
537
histone modification
536
histone
289
narrow histone mark
247
broad histone mark
171
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
November, 2019
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1812
bam
1652
bigWig
1036
tsv
842
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2558
Homo sapiens
Biosample type
2567
tissue
1051
primary cell
585
cell line
386
in vitro differentiated cells
6
stem cell
Organ
546
connective tissue
496
pancreas
487
adipose tissue
358
liver
299
kidney
266
heart
263
brain
158
bone element
130
blood vessel
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2474
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1706
GRCh38
1669
hg19
Lab
2255
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
month_released!
March, 2020
BIOSAMPLE
ASSAY
2567 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
296
69
66
1
7
1
3
4
1
4
adipose tissue
382
2
3
3
liver
166
145
20
2
1
3
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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