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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
580
total RNA-seq
514
ChIP-seq
211
ATAC-seq
168
single cell RNA-seq
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
RNA microarray
1
DNase-seq
Assay category
764
Transcription
514
DNA binding
240
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
171
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
February, 2021
262
August, 2017
223
August, 2021
193
May, 2020
189
October, 2019
120
July, 2018
68
July, 2019
66
May, 2022
60
February, 2023
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
29
October, 2018
25
November, 2017
22
February, 2020
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
11
May, 2019
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1368
bam
1258
bigWig
876
bed narrowPeak
610
tsv
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
68
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1597
Homo sapiens
Biosample type
1600
tissue
915
primary cell
351
in vitro differentiated cells
211
cell line
10
stem cell
Organ
443
pancreas
311
liver
225
heart
204
kidney
149
brain
93
connective tissue
92
adipose tissue
71
blood vessel
vasculature
53
eye
48
artery
44
musculature of body
32
limb
20
lung
17
nerve
15
epithelium
12
spleen
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1503
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
809
GRCh38
802
hg19
Lab
1248
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
4
audit script error
Audit category:
23
missing controlled_by
organ_slims!
vasculature
month_released!
February, 2021
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1600 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
RNA microarray
DNase-seq
tissue
islet of Langerhans
292
71
68
6
7
4
3
1
4
liver
167
107
20
3
1
1
1
1
kidney
49
9
75
59
6
1
1
left cardiac atrium
40
18
subcutaneous abdominal adipose tissue
36
3
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