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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
765
ChIP-seq
221
ATAC-seq
167
single cell RNA-seq
141
DNase-seq
87
RNA microarray
27
snATAC-seq
24
WGBS
23
pCHi-C
15
small RNA-seq
9
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1207
Transcription
765
DNA binding
393
DNA accessibility
31
DNA methylation
9
3D chromatin structure
Target of assay
514
histone modification
513
histone
282
narrow histone mark
231
broad histone mark
167
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
128
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
64
May, 2022
63
July, 2019
60
February, 2023
58
May, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
November, 2019
32
March, 2020
26
November, 2018
23
October, 2017
20
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1776
bam
1605
bigWig
1055
tsv
793
bed narrowPeak
461
bigBed narrowPeak
375
fastq
223
tagAlign
167
bed bed3+
163
bed broadPeak
156
txt
139
bigBed broadPeak
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2513
Homo sapiens
Biosample type
2522
tissue
1037
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2425
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1672
GRCh38
1624
hg19
Lab
2210
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
musculature of body
BIOSAMPLE
ASSAY
2522 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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