Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
78
ChIP-seq
25
DNase-seq
14
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
108
Transcription
78
DNA binding
28
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
37
broad histone mark
21
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
92
August, 2021
57
April, 2019
25
June, 2019
19
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
2
February, 2020
2
May, 2021
1
February, 2023
Available data
124
bam
111
bigWig
110
tsv
92
bed narrowPeak
83
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
229
Homo sapiens
Biosample type
229
tissue
11
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
229
AMP
Genome assembly (visualization)
110
GRCh38
107
hg19
Lab
229
AMP-T2D consortium
organ_slims!
vasculature
BIOSAMPLE
ASSAY
229 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
3
4
2
1
1
1
heart
1
14
18
4
1
1
1
heart right ventricle
17
13
1
1
2
1
1
right cardiac atrium
18
6
1
1
left cardiac atrium
18
1
+ See 9 more…
See all biosamples
Download