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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
125
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
18
ChIP-seq
17
pCHi-C
8
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
186
Transcription
182
DNA accessibility
50
DNA methylation
18
DNA binding
6
3D chromatin structure
Target of assay
17
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
147
May, 2020
134
May, 2022
79
May, 2021
26
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
8
June, 2019
5
April, 2018
5
December, 2019
5
October, 2019
4
November, 2020
3
October, 2022
2
February, 2021
1
August, 2021
1
March, 2023
1
May, 2019
Available data
584
bigWig
577
bam
fastq
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
459
Homo sapiens
Biosample type
1552
tissue
459
primary cell
214
in vitro differentiated cells
124
cell line
6
stem cell
Organ
123
epithelium
88
pancreas
19
connective tissue
14
kidney
vasculature
13
blood vessel
9
vein
8
blood
8
bodily fluid
8
liver
7
brain
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
183
AMP
155
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
194
hg19
131
GRCh38
Lab
178
AMP-T2D consortium
155
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
22
inconsistent ontology term
3
audit script error
organ_slims!
vasculature
files.file_type!
fastq
bed narrowPeak
BIOSAMPLE
ASSAY
459 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
51
21
monocyte
2
54
1
1
1
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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