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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
757
total RNA-seq
536
ChIP-seq
173
ATAC-seq
167
single cell RNA-seq
162
DNase-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
14
Hi-C
13
small RNA-seq
12
WGBS
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
937
Transcription
536
DNA binding
365
DNA accessibility
20
DNA methylation
14
3D chromatin structure
Target of assay
448
histone
448
histone modification
241
narrow histone mark
207
broad histone mark
78
control
12
transcription factor
10
RNA binding protein
2
nucleotide modification
Date released
544
February, 2021
223
August, 2021
210
October, 2019
160
June, 2019
118
July, 2018
83
August, 2017
82
November, 2017
80
April, 2019
65
May, 2019
62
July, 2019
60
February, 2023
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
34
March, 2020
21
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
Available data
1532
bam
1437
bigWig
908
tsv
771
bed narrowPeak
450
bigBed narrowPeak
fastq
205
bed broadPeak
194
bed bed3+
168
bigBed broadPeak
168
tagAlign
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
9
hic
8
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1987
Homo sapiens
Biosample type
1989
tissue
635
primary cell
253
in vitro differentiated cells
135
cell line
6
stem cell
Organ
504
connective tissue
445
adipose tissue
313
heart
299
kidney
292
pancreas
liver
253
brain
158
bone element
133
blood vessel
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1892
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1298
GRCh38
1186
hg19
Lab
1703
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
9
audit script error
organ_slims!
vasculature
liver
files.file_type!
fastq
BIOSAMPLE
ASSAY
1989 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
7
4
3
1
4
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
1
4
1
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