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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
61
Transcription
4
DNA accessibility
Date released
84
February, 2021
57
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
2518
bam
2391
bigWig
1470
bed narrowPeak
tsv
881
fastq
868
bigBed narrowPeak
373
tagAlign
284
bed broadPeak
261
bigBed broadPeak
231
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
14
bedpe bed3+
13
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
tagAlign bed3+
1
vcf
Organism
149
Homo sapiens
Biosample type
146
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
57
kidney
pancreas
4
skeleton
1
musculature of body
Project
150
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
organ_slims!
vasculature
pancreas
files.file_type!
tsv
cool
BIOSAMPLE
ASSAY
150 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
8
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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