Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
43
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
57
Transcription
43
DNA binding
3
3D chromatin structure
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
400
November, 2017
322
August, 2017
251
October, 2019
226
May, 2021
211
June, 2019
200
May, 2022
195
August, 2021
154
February, 2023
152
May, 2020
142
February, 2021
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
70
May, 2019
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
40
May, 2024
36
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
17
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
Organism
194
Homo sapiens
Biosample type
130
tissue
35
in vitro differentiated cells
26
cell line
4
primary cell
Organ
130
kidney
25
liver
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
128
Katalin Susztak, Upenn
38
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
vasculature
files.file_type!
tsv
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
195 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
Download