Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
13
ATAC-seq
12
single cell RNA-seq
2
ChIP-seq
1
pCHi-C
Assay category
40
DNA accessibility
12
Transcription
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
268
August, 2017
245
October, 2019
226
May, 2021
209
June, 2019
170
August, 2021
160
May, 2022
154
February, 2023
139
February, 2021
102
May, 2020
85
November, 2017
80
April, 2019
74
October, 2018
70
May, 2019
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
40
May, 2024
35
November, 2018
34
December, 2018
34
July, 2019
31
December, 2017
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
16
March, 2020
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
505
bam
495
bigWig
89
txt
45
fastq
10
bed narrowPeak
5
csv
4
bed bedgraph
2
tagAlign
1
bed bed3
1
bed bed3+
Organism
139
Homo sapiens
Biosample type
92
tissue
41
primary cell
4
in vitro differentiated cells
2
cell line
Organ
92
bone element
14
artery
14
blood vessel
14
heart
vasculature
8
skeleton
6
connective tissue
6
limb
liver
Project
100
AMP
39
HPAP
Genome assembly (visualization)
15
hg19
10
GRCh38
Lab
100
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
organ_slims!
vasculature
liver
files.file_type!
tsv
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 4 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
cell line
iPSC derived cell line
2
See all biosamples
Download