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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
28
DNase-seq
8
WGBS
3
ATAC-seq
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
123
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
33
June, 2019
16
May, 2019
13
July, 2019
6
October, 2019
2
March, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
168
Homo sapiens
Biosample type
159
tissue
9
primary cell
Organ
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
168
AMP
Genome assembly (visualization)
143
GRCh38
100
hg19
Lab
128
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
vasculature
liver
files.file_type!
tsv
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
3
4
2
1
1
left cardiac atrium
40
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
2
1
+ See 1 more…
primary cell
cardiac fibroblast
5
3
1
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