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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
Assay category
19
DNA accessibility
Date released
13
February, 2023
6
February, 2021
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
19
Homo sapiens
Biosample type
12
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
10
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
19
AMP
Genome assembly (visualization)
19
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
organ_slims!
vasculature
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
19 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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