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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
Hi-C
Assay category
12
DNA accessibility
3
3D chromatin structure
Date released
10
February, 2023
3
October, 2022
2
February, 2021
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
primary cell
1
cell line
Organ
6
connective tissue
4
bone element
4
skeleton
3
epithelium
3
pancreas
1
brain
1
liver
Project
12
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent replicate
organ_slims!
vasculature
BIOSAMPLE
ASSAY
15 results
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ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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