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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
108
ChIP-seq
2
ATAC-seq
Assay category
108
DNA binding
2
DNA accessibility
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
66
November, 2017
39
August, 2017
4
October, 2017
1
March, 2019
Available data
3009
bam
2776
bigWig
1532
tsv
1446
bed narrowPeak
1340
fastq
761
bigBed narrowPeak
392
tagAlign
161
txt
153
zippedFastqFolder
110
bed broadPeak
73
bigBed broadPeak
67
bed bed3+
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
104
Homo sapiens
Biosample type
58
cell line
37
tissue
15
primary cell
Organ
58
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
110
AMP
Genome assembly (visualization)
109
hg19
73
GRCh38
Lab
108
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
vasculature
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
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