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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
103
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
103
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
62
November, 2017
40
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3171
bam
2938
bigWig
1608
bed narrowPeak
1532
tsv
1316
fastq
925
bigBed narrowPeak
392
tagAlign
300
bed broadPeak
263
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
294
Homo sapiens
Biosample type
208
tissue
55
cell line
36
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
300
AMP
Genome assembly (visualization)
277
hg19
262
GRCh38
Lab
298
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
2
inconsistent assembly
organ_slims!
vasculature
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
300 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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