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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
ChIP-seq
30
DNase-seq
1
FAIRE-seq
Assay category
166
DNA binding
31
DNA accessibility
Target of assay
165
histone
165
histone modification
104
narrow histone mark
61
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
75
October, 2019
60
November, 2017
28
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
235
bam
213
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
197
Homo sapiens
Biosample type
192
tissue
5
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
197
AMP
Genome assembly (visualization)
195
GRCh38
135
hg19
Lab
197
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 68 more…
primary cell
astrocyte of the cerebellum
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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