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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
6
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
1
October, 2019
Available data
2916
bam
2715
bigWig
1512
bed narrowPeak
1401
tsv
1211
fastq
942
bigBed narrowPeak
352
tagAlign
304
bed broadPeak
267
bigBed broadPeak
235
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
7
bed bed3
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
9
tissue
in vitro differentiated cells
3
primary cell
2
cell line
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
vasculature
1
vein
Project
11
AMP
3
HPAP
Genome assembly (visualization)
13
hg19
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
organ_slims!
vasculature
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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