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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
RRBS
16
WGBS
8
single cell RNA-seq
3
Hi-C
Assay category
34
DNA methylation
8
Transcription
3
3D chromatin structure
Date released
23
July, 2019
8
November, 2018
6
August, 2017
6
February, 2021
1
October, 2019
1
September, 2018
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
45
Homo sapiens
Biosample type
30
tissue
13
primary cell
2
cell line
Organ
9
kidney
8
epithelium
8
heart
7
pancreas
5
brain
5
liver
4
connective tissue
4
musculature of body
vasculature
3
blood vessel
2
adipose tissue
2
spleen
1
eye
1
limb
1
pericardium
Project
45
AMP
Genome assembly (visualization)
21
hg19
17
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
45 results
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RRBS
WGBS
single cell RNA-seq
Hi-C
tissue
kidney
1
5
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 10 more…
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 7 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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