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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
Assay category
292
DNA binding
Target of assay
223
histone
223
histone modification
127
narrow histone mark
96
broad histone mark
64
control
5
transcription factor
Date released
78
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
6
May, 2021
2
February, 2021
Available data
2630
bam
2430
bigWig
1410
bed narrowPeak
1264
tsv
949
fastq
871
bigBed narrowPeak
292
tagAlign
268
bed broadPeak
231
bed bed3+
231
bigBed broadPeak
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
285
Homo sapiens
Biosample type
238
tissue
primary cell
40
in vitro differentiated cells
14
cell line
Organ
118
brain
82
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
vasculature
3
epithelium
1
pituitary gland
Project
292
AMP
Genome assembly (visualization)
144
GRCh38
135
hg19
Lab
292
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
biosample_type!
primary cell
BIOSAMPLE
ASSAY
292 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
iPSC derived cell line
2
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