Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
15
ATAC-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
16
DNA accessibility
Date released
91
February, 2021
57
August, 2021
17
February, 2023
7
May, 2022
1
October, 2022
Available data
3207
bam
2974
bigWig
1644
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
172
Homo sapiens
Biosample type
162
tissue
8
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
bone element
62
kidney
8
skeleton
6
connective tissue
6
pancreas
1
brain
1
liver
1
musculature of body
Project
173
AMP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
107
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
1
inconsistent replicate
organ_slims!
vasculature
BIOSAMPLE
ASSAY
173 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
1
ilium
1
1
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
primary cell
osteoblast
1
See all biosamples
Download