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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
RRBS
16
WGBS
1
whole genome sequencing assay
Assay category
34
DNA methylation
1
DNA sequencing
Date released
21
July, 2019
7
November, 2018
6
August, 2017
1
August, 2021
Available data
3207
bam
2974
bigWig
1644
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
35
Homo sapiens
Biosample type
24
tissue
9
primary cell
2
cell line
Organ
8
heart
6
epithelium
6
pancreas
4
kidney
4
liver
4
musculature of body
3
connective tissue
2
adipose tissue
2
brain
2
spleen
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
35
AMP
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
34
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
35 results
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RRBS
WGBS
whole genome sequencing assay
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 10 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
HepG2
1
1
See all biosamples
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