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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
73
ChIP-seq
18
RRBS
16
WGBS
1
whole genome sequencing assay
Assay category
195
DNA accessibility
73
DNA binding
34
DNA methylation
1
DNA sequencing
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
60
November, 2017
21
August, 2017
21
July, 2019
16
November, 2018
3
October, 2019
1
August, 2021
1
November, 2020
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
303
Homo sapiens
Biosample type
195
tissue
61
cell line
46
primary cell
1
in vitro differentiated cells
Organ
82
kidney
67
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
vasculature
18
ureter
14
blood vessel
13
pancreas
12
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
303
AMP
Genome assembly (visualization)
268
GRCh38
264
hg19
Lab
302
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
303 results
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DNase-seq
ChIP-seq
RRBS
WGBS
whole genome sequencing assay
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 41 more…
cell line
HepG2
58
1
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
astrocyte of the cerebellum
1
2
cardiac muscle cell
1
1
epithelial cell of proximal tubule
1
1
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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