Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
18
RRBS
16
WGBS
1
whole genome sequencing assay
Assay category
64
DNA accessibility
34
DNA methylation
1
DNA sequencing
Date released
65
August, 2021
21
July, 2019
7
November, 2018
6
August, 2017
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
99
Homo sapiens
Biosample type
88
tissue
9
primary cell
2
cell line
Organ
68
kidney
8
heart
6
epithelium
6
pancreas
4
liver
4
musculature of body
3
connective tissue
2
adipose tissue
2
brain
2
spleen
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
99
AMP
Genome assembly (visualization)
80
GRCh38
18
hg19
Lab
64
Katalin Susztak, Upenn
34
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
99 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
RRBS
WGBS
whole genome sequencing assay
tissue
kidney
64
1
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 10 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
HepG2
1
1
See all biosamples
Download