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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
57
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
6
total RNA-seq
Assay category
400
DNA binding
79
DNA accessibility
41
DNA methylation
40
Transcription
Target of assay
242
transcription factor
86
histone
86
histone modification
69
control
66
recombinant protein
50
broad histone mark
36
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
170
February, 2023
168
July, 2018
160
May, 2022
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
410
bam
342
fastq
328
bigWig
327
bed narrowPeak
308
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
560
Homo sapiens
Biosample type
315
cell line
137
primary cell
108
tissue
Organ
315
liver
104
pancreas
91
brain
86
epithelium
vasculature
3
blood vessel
2
musculature of body
Project
426
AMP
134
HPAP
Genome assembly (visualization)
294
hg19
276
GRCh38
Lab
402
AMP-T2D consortium
134
Klaus Kaestner, Upenn
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
vasculature
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
560 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
cell line
HepG2
315
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
3
tissue
islet of Langerhans
18
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
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