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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
1
whole genome sequencing assay
Assay category
3
3D chromatin structure
1
DNA sequencing
Date released
3
October, 2022
1
August, 2021
Available data
3207
bam
3009
bigWig
1680
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
258
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
4
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Organ
3
epithelium
3
pancreas
1
liver
Project
3
HPAP
1
AMP
Genome assembly (visualization)
3
hg19
Lab
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
organ_slims!
vasculature
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
4 results
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Hi-C
whole genome sequencing assay
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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